ggalign - A 'ggplot2' Extension for Consistent Axis Alignment

A 'ggplot2' extension offers various tools the creation of complex, multi-plot visualizations. Built on the familiar grammar of graphics, it provides intuitive tools to align and organize plots, making it ideal for complex visualizations. It excels in multi-omics research—such as genomics and microbiomes—by simplifying the visualization of intricate relationships between datasets, for example, linking genes to pathways. Whether you need to stack plots, arrange them around a central figure, or create a circular layout, 'ggalign' delivers flexibility and accuracy with minimal effort.

Last updated 12 days ago

complex-heatmapsdendrogramdendrogram-heatmapggplotggplot-extensionggplot2heatmapheatmap-visualizationheatmapsmarginal-plotsoncoplotoncoprinttanglegramupsetupsetplot

7.08 score 267 stars 27 scripts 482 downloads

faers - R interface for FDA Adverse Event Reporting System

The FDA Adverse Event Reporting System (FAERS) is a database used for the spontaneous reporting of adverse events and medication errors related to human drugs and therapeutic biological products. faers pacakge serves as the interface between the FAERS database and R. Furthermore, faers pacakge offers a standardized approach for performing pharmacovigilance analysis.

Last updated 5 months ago

softwaredataimportbiomedicalinformaticspharmacogenomicsadverse-eventsdrug-safetyfaersfaers-procedurepharmacovigilancesignal-detection

5.95 score 20 stars 5 scripts 214 downloads

blit - Bioinformatics Library for Integrated Tools

An all-encompassing R toolkit designed to streamline the process of calling various bioinformatics software and then performing data analysis and visualization in R. With 'blit', users can easily integrate a wide array of bioinformatics command line tools into their workflows, leveraging the power of R for sophisticated data manipulation and graphical representation.

Last updated 5 hours ago

4.86 score 3 stars 1 dependents 3 scripts 366 downloads

BPCellsArray - Using BPCells as a DelayedArray Backend

Implements a DelayedArray backend for reading and writing arrays in the BPCells storage layout. The resulting BPCells*Arrays are compatible with all Bioconductor pipelines that can accept DelayedArray instances.

Last updated 8 months ago

softwaredataimportdatarepresentationinfrastructuresingle-cell

4.32 score 7 stars

rsahmi - Single-Cell Analysis of Host-Microbiome Interactions

A computational resource designed to accurately detect microbial nucleic acids while filtering out contaminants and false-positive taxonomic assignments from standard transcriptomic sequencing of mammalian tissues. For more details, see Ghaddar (2023) <doi:10.1038/s43588-023-00507-1>. This implementation leverages the 'polars' package for fast and systematic microbial signal recovery and denoising from host tissue genomic sequencing.

Last updated 1 days ago

microbiomesahmisingle-cell

3.90 score 13 downloads